Ensembl Genomes Release 16 Notes
General
- Released 30th October 2012
- Update to Ensembl 69 software
- Update of pan homology comparative genomics database to include latest versions of genomes from Ensembl and Ensembl Genomes
Protists
- Updated data
- Added repeat features to Albugo laibachii
- Protein features for Hyaloperonospora arabidopsidis, Plasmodium falciparum and Tetrahymena thermophila
- Minor bugfixes for comparative genomics database
- Updated BioMarts
Metazoa
- New genomes
- Nasonia vitripennis (Jewel wasp)
- Anopheles darlingi (South and Central American malaria mosquito)
- Updated genomes
- Updated Drosophila melanogaster to use data from FlyBase 5.46
- updated gene models
- updated variation consequences
- updated array mapping
- correction to Anopheles gambiae variation database to permit use of LD and transcript displaysy
- updated Caenorhabditis japonica gene models and assembly
- updated Caenorhabditis brenneri gene models and assembly
- updated Caenorhabditis remanei gene models and assembly
- updated Pristionchus pacificus cross-referencesi
- New data
- Anopheles gambiae: added functionality for LD display; added data from insecticide resistance study by Liverpool School of Tropical Medicine
- Updated data
- Updated comparative genomics
- Peptide
- Drosophilids DNA
- Worm DNA
- Mosquito DNA
- Updated BioMarts
Fungi
- New data
- Addition of Fusarium oxysporum variation database based on sequencing of 23 different strains from the SRA
- Updated data
- Schizosaccharomyces pombe
- Puccinia graminis
- Import descriptions and gene names from Broad (where available)
- Add missing InterPro annotations
- Update ncRNA stable identifiers
- Add repeat features to Botryotinia fuckeliana
- Updated BioMarts
Plants
- New genomes
- Hordeum vulgare (barley)
- Solanum tuberosum (potato)
- Musa acuminata (banana)
- Updated genomes
- Updated gene models for Glycine max (soybean)
- New data
- Updated and improved Triticum aestivum (wheat) homoeologous SNPs and 'gene space' assembly alignments to Brachypodium distachyon (purple false brome)
- New EST alignments for Physcomitrella patens (moss)
- New repeats feature annotation for Selaginella moellendorffii (lycopod)
- Updated data
- Update to peptide and DNA comparative genomics
- Clean up of non-translating genes in Vitis vinifera (grape)
- Updated BioMarts